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Publications in 2013

  • Amin E, Dubey BN, Zhang SC, Gremer L, Dvorsky R, Moll JM, Taha MS, Nagel-Steger L, Piekorz RP, Somlyo AV, Ahmadian MR 
    Rho-kinase: regulation, (dys)function, and inhibition 
    Biol Chem. 394, 1399-1410 (2013) 
    full text  
  • Arslan Z, Stratmann T, Wurm R, Wagner R, Schnetz K, Pul U 
    RcsB-BglJ mediated activation of Cascade operon does not induce the maturation of CRISPR RNAs in E. coli K12 
    RNA Biol. 10, 708-715 (2013) 
    full text  
  • Arslan Z, Westra ER, Wagner R, Pul U 
    Regulation of CRISPR-based immune responses 
    In: CRISPR-Cas systems: RNA-mediated Adaptive Immunity in Bacteria and Archaea, Barrangou, Rodolphe; van der Oost, John (Eds.) , Springer-Verlag X, 93-113 (2013) 
    full text  
  • Arslan Z, Wurm R, Brener O, Ellinger P, Nagel-Steger L, Oesterhelt F, Schmitt L, Willbold D, Wagner R, Gohlke H, Smits S, Pul U 
    Double-strand DNA end-binding and sliding of the toroidal CRISPR-associated protein Csn2. 
    Nucl Acids Res 41, 6347-6359 (2013) 
    open access  
  • Bannach O, Reinartz E, Henke F, Dreßen F, Oelschlegel A, Kaatz M, Groschup M H, Willbold D, Riesner D and Birkmann E 
    Analysis of prion protein aggregates in blood and brain from pre-clinical and clinical BSE cases 
    Vet Microbiol 166, 102-108 (2013) 
    http://dx.doi.org/10.1016/j.vetmic.2013.05.021  
  • Bannach O, Riesner D 
    Prions Overview 
    In: The Encyclopedia of Biological Chemistry. William J. Lennarz, M. Daniel Lane (eds.), Elsevier Inc. 3, 571-575 (2013) 
  • Bier D, Hartmann R, Holschbach M 
    Collision-induced dissociation studies of caffeine in positive electrospray ionisation mass spectrometry using six deuterated isotopomers and one N1-ethylated homologue 
    Rapid communications in mass spectrometry 27, 885-895 (2013) 
  • Bobby R, Medini K, Neudecker P, Lee TV, Brimble MA, McDonald FJ, Lott JS, Dingley AJ 
    Structure and dynamics of human Nedd4-1 WW3 in complex with the αENaC PY motif 
    Biochim Biophys Acta 1834, 1632-41 (2013) 
    http://dx.doi.org/10.1016/j.bbapap.2013.04.031  
  • Bock LV, C Blau, GF Schröder, II Davydov, N Fischer, H Stark, MV Rodnina, AC Vaiana, and H Grubmüller 
    Energy barriers and driving forces in tRNA translocation through the ribosome 
    Nat. Struct. Mol. Biol. 20, 1390-1396 (2013) 
    http://www.nature.com/nsmb/journal/vaop/ncurrent/abs/nsmb.2690.html  
  • Chen D-H, Madan D, Weaver J, Lin Z, Schröder GF, Chiu W, Rye HS 
    Visualizing GroEL/ES in the Act of Encapsulating a Folding Protein 
    Cell 153, 1354-1365 (2013) 
  • Chen DH, Madan D, Weaver J, Lin Z, Schröder GF, Chiu W, Rye HS 
    Visualizing GroEL/ES in the Act of Encapsulating a Folding Protein 
    Cell 153, 1354–1365 (2013) 
  • Chien T-H, Chiang Y-L, Chen C-P, Henklein P, Hänel K, Hwang I-S, Willbold D, Fischer WB 
    Assembling an ion channel: ORF 3a from SARS-CoV 
    Biopolymers 99, 628-635 (2013) 
    http://dx.doi.org/10.1002/bip.22230  
  • Deng X, J Morris, C Chaton, GF Schröder, WS Davidson and TB Thompson 
    Small-angle X-ray Scattering of Apolipoprotein A-IV Reveals the Importance of Its Termini for Structural Stability 
    J. Biol. Chem. 288, 4854 (2013) 
  • Dioletis E, Dingley AJ, Driscoll PC 
    Structural and functional characterization of the recombinant death domain from death-associated protein kinase 
    PLoS One 8, e70095 (2013) 
    full text  
  • Do H, Wittlich M, Glück JM, Möckel L, Willbold D, Koenig BW, Heise H 
    Full-length Vpu and human CD4(372-433) in phospholipid bilayers as seen by magic angle spinning NMR. 
    Biol. Chem. 394, 1453-1463 (2013) 
  • Dornieden S, Müller-Schiffmann A, Sticht H, Cinar Y, Wördehoff M, Korth C, Funke SA, Willbold D 
    Characterization of a single-chain variable fragment recognizing a linear epitope of Aß: A biotechnical tool for studies on Alzheimer's disease? 
    PLoS ONE 8, e59820 (2013) 
  • Eichhorn T, Winter D, Büchele B, Dirdjaja N, Frank M, Lehmann WD, Mertens R, Krauth-Siegel RL, Simmet T, Granzin J, Efferth T 
    Molecular interaction of artemisinin with translationally controlled tumor protein (TCTP) of Plasmodium falciparum. 
    Biochem Pharmacol. 85, 38-45 (2013) 
    http://dx.doi.org/10.1016/j.bcp.2012.10.006  
  • Falkner B and Schröder GF 
    Cross-validation in cryo-electron microscopy based structural modeling 
    PNAS 110, 8930 (2013) 
  • Falkner B, Schröder GF 
    Cross-validation in cryo-electron microscopy based structural modeling 
    PNAS 110(22), 8930-8935 (2013) 
  • Grüning CS, Klinker S, Wolff M, Schneider M, Toksöz K, Klein AN, Nagel-Steger L, Willbold D, Hoyer W 
    The off-rate of monomers dissociating from amyloid-beta protofibrils 
    J. Biol. Chem. 288, 37104-37111 (2013) 
    http://dx.doi.org/10.1074/jbc.M113.513432  
  • Kalisman N, GF Schröder, M Levitt 
    The Crystal Structures of the Eukaryotic Chaperonin CCT Reveal its Functional Partitioning 
    Structure 21, 540 (2013) 
  • Kovacic F, Granzin J, Wilhelm S, Kojic-Prodic B, Batra-Safferling R, Jaeger KE 
    Structural and Functional Characterisation of TesA - A Novel Lysophospholipase A from Pseudomonas aeruginosa. 
    PLoS One 8, e69125 (2013) 
    http://dx.doi.org/10.1371/journal.pone.0069125  
    http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0069125  
  • Kruse C, Willbold D, Schmitt L 
    Highlight: NRW Research School BioStruct - Biological Structures in Molecular Medicine and Biotechnology. 
    Biol. Chem. 394, 1353-1355 (2013) 
  • Luers, L, Bannach, O, Stöhr, J, Wördehoff, MM, Wolff M, Nagel-Steger, L, Riesner, D, Willbold, D, Birkmann E 
    Seeded Fibrillation as Molecular Basis of the Species Barrier in Human Prion Diseases 
    PloS ONE 8, e72623 (2013) 
  • Ma P, Schwarten M, Schneider L, Boeske A, Henke N, Lisak D, Weber S, Mohrlüder J, Stoldt M, Strodel B, Methner A, Hoffmann S, Weiergräber OH, Willbold D 
    Interaction of Bcl-2 with the autophagy-related GABAA receptor-associated protein (GABARAP): Biophysical characterization and functional implications 
    J Biol Chem 288, 37204-37215 (2013) 
  • Marbach, J; Zentis, P; Ellinger, P; Müller, H; Birkmann, E 
    Expression and characterization of fully posttranslational modified cellular prion protein in Pichia pastoris 
    Biol. Chem. 394, 1475-1483 (2013) 
  • Marchfelder A, Maier L-K, Heidrich N, Pul U 
    Das Immunsystem der Prokaryoten: CRISPR-Cas 
    BiuZ 43(3), 158-165 (2013) 
    full text (Cover article)  
  • Pavlidou M, Hänel K, Möckel L, Willbold D 
    Nanodiscs allow phage display selection for ligands to non-linear epitopes on membrane proteins 
    PLoS ONE 9, e72272 (2013) 
  • Pham C, Hartmann R, Müller WEG, de Voogd N, Lai D, Proksch P 
    Aaptamine Derivates from the Indonesian Sponge Aaptos suberitoides 
    Journal of natural products 76(1), 103-106 (2013) 
  • Pham C, Weber H, Hartmann R, Wray V, Lin W, Lai D, Proksch P 
    New Cytotoxic 1,2,4.Thiadiazole Alkaloids fromthe Ascidian Polycarpa aurata 
    Organic letters 15, 2230-2233 (2013) 
    http://dx.doi.org/10.1016/j.bbamem.2012.09.001  
  • Rani R, Jentzsch K, Lecher L, Hartmann R, Willbold D, Jaeger K-E, Krauss U 
    Conservation of dark recovery kinetic parameters and structural features in the Pseudomonadaceae “short” LOV protein family – implications for the design of LOV-based optogenetic tools. 
    Biochemistry 52, 4460-4473 (2013) 
  • Reinauer C, Censarek P, Kaber G, Weber AA, Steger G, Klamp T, Schrör K 
    Expression and translation of the COX-1b gene in human cells--no evidence of generation of COX-1b protein 
    Biol Chem 394, 753-760 (2013) 
    http://dx.doi.org/10.1515/hsz-2012-0309  
  • Schünke S, Stoldt M 
    Structural snapshot of cyclic nucleotide binding domains from cyclic nucleotide-sensitive ion channels 
    Biol Chem. 394, 1439-1451 (2013) 
    http://www.ncbi.nlm.nih.gov/pubmed/24021595  
  • Schwarten M, Solyom Z, Feuerstein S, Aladag A, Hoffmann S, Willbold D, Brutscher B 
    Interaction of non-structural protein 5A of hepatitis C virus with SH3 domains using non-canonical binding sites 
    Biochemistry 52, 6160-6168 (2013) 
  • Solyom Z, Schwarten M, Geist L, Konrat R, Willbold D, Brutscher B 
    BEST-TROSY experiments for time-efficient sequential resonance assignment of large disordered proteins 
    J. Biomol. NMR 55, 311-221 (2013) 
  • Steger G, Giegerich R 
    RNA structure prediction 
    in "RNA Structure and Folding: Biophysical Techniques and Prediction Methods" (Klostermeier D, Hammann C) de Gruyter, 335-362 (2013) 
    http://dx.doi.org/10.1515/9783110284959.335  
  • Stern O, Hung Y-F, Valdau O, Yaffe Y, Harris E, Hoffmann S, Willbold D, Sklan E 
    An N-terminal amphipathic helix in the Dengue virus nonstructural protein 4A mediates oligomerization and is essential for replication. 
    J. Virol. 87, 4080-4085 (2013) 
  • Steuten B, Setney P, Zacharias M, Wagner R 
    Mapping the Spatial Neighborhood of the Regulatory 6S RNA Bound to Escherichia coli RNA Polymerase Holoenzyme 
    J. Mol. Biol. 425, 3649-3661 (2013) 
  • Thakur HC, Singh M, Nagel-Steger L, Prumbaum D, Kalawy Fansa E, Gremer L, Ezzahoini H, Abts A, Schmitt L, Raunser S, Ahmadian MR, Piekorz RP 
    Role of centrosomal adaptor proteins of the TACC family in the regulation of microtubule dynamics during mitotic cell division 
    Biol Chem 394, 1411-1423 (2013) 
    full text  
  • van Groen T, Kadish I, Funke SA, Bartnik D, Willbold D 
    Treatment with D3 removes amyloid deposits, reduces inflammation, and improves cognition in old AβPP/PS1 double transgenic mice. 
    J Alzheimer's Dis. 34, 609-620 (2013) 
    open access  
  • Vasudevan AA, Smits SH, Hoeppner A, Haeussinger D, Koenig BW, Muenk C 
    Structural features of antiviral DNA cytidine deaminases 
    Biological Chemistry 394, 1357 - 1370 (2013) 
  • Wang-Dietrich L, Funke SA, Kühbach K, Wang K, Besmehn A, Willbold S, Cinar Y, Bannach O, Birkmann E, Willbold D 
    The Aβ oligomer count in CSF is a biomarker for Alzheimer’s disease. 
    J. Alzheimers Dis. 34, 985-994 (2013) 
  • Weiergräber OH, Mohrlüder J, Willbold D 
    Atg8 family proteins –- autophagy and beyond 
    in: Autophagy - A double-edged sword - Cell survival or death? ISBN 978-953-51-1062-0, Editor: Yannick Bailly (2013) 
    open access  
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